PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010414-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 350aa    MW: 37983.8 Da    PI: 5.2856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010414-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14115166155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  NNU_010414-RA 115 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 166
                    79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.26E-15112170No hitNo description
Gene3DG3DSA:4.10.280.107.4E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18113188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCDSISNLFD EAELGDANFM GDTSPDEIFS LLESLEGASE ISPLTPLEET VVSPKGGNGS  60
SSCEDARLVS QKSVTSSSVH QQDTETEAEA SPARKRPKLS AASSSSEEPP QDGQQRMSHI  120
TVERNRRKQM NEHLSVLRSL MPCFYVKRGD QASIIGGVVD YIKELQQVLQ SLEAKKQRKV  180
YSEVLSPRLV SSPRPSPLSP RKPPLSPRVS LPISPRTPQP GSPYKQPRLQ QGYPSPSPTN  240
IATSHESSST LTCSSFDNPN KELGANSKSA IADVEVKFSG PNVLLKTISP RIPGQALKIV  300
AALESLSLEI LHVSISTIDD TMLNSFTIKI GIECELSAEE LAHEIQQTFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115126RMSHITVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261507.10.0PREDICTED: transcription factor SPEECHLESS-like
RefseqXP_010261508.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-109SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLE0CUJ91e-151E0CUJ9_VITVI; Speechless
STRINGVIT_16s0050g02500.t011e-150(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-59bHLH family protein